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1

Lipid-Dependent Regulation of Ion Channels and G Protein–Coupled Receptors: Insights from Structures and Simulations

Duncan, Anna L., Song, Wanling, Sansom, Mark S.P.

Journal:

Annual Review of Pharmacology

Année:

2020

Langue:

english

Fichier:

PDF, 3.23 MB

english, 2020

2

Carbon nanotube self-assembly with lipids and detergent: a molecular dynamics study

Wallace, E Jayne, Sansom, Mark S P

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2009

3

Coarse-grained molecular dynamics simulations of membrane proteins and peptides

Peter J. Bond, John Holyoake, Anthony Ivetac, Syma Khalid, Mark S.P. Sansom

Journal:

Journal of Structural Biology

Année:

2007

Langue:

english

Fichier:

PDF, 2.38 MB

english, 2007

4

Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion

Reddy, Tyler, Shorthouse, David, Parton, Daniel, Jefferys, Elizabeth, Fowler, Philip W., Chavent, Matthieu, Baaden, Marc, Sansom, Mark S.P.

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 42 KB

english, 2015

5

A NEW OSTEOSTRACAN FAUNA FROM THE DEVONIAN OF THE WELSH BORDERLANDS AND OBSERVATIONS ON THE TAXONOMY AND GROWTH OF OSTEOSTRACI

JOSEPH N. KEATING, ROBERT S. SANSOM and MARK A. PURNELL

Journal:

Journal of Vertebrate Paleontology

Année:

2012

Langue:

english

Fichier:

PDF, 4.97 MB

english, 2012

6

Knowledge capture to inform sustainable maritime operations

Kuznetsov, Andrei, Dinwoodie, John, Gibbs, David, Sansom, Mark, Knowles, Harriet

Journal:

International Journal of Operations & Production Management

Année:

2017

Langue:

english

Fichier:

PDF, 624 KB

english, 2017

7

Sustainable Development of Maritime Operations in Ports

John Dinwoodie, Sarah Tuck, Harriet Knowles, James Benhin, Mark Sansom

Journal:

Business Strategy and the Environment

Année:

2012

Langue:

english

Fichier:

PDF, 143 KB

english, 2012

8

Three hydrolases and a transferase: Comparative analysis of active-site dynamics via the BioSimGrid database

Kaihsu Tai, Marc Baaden, Stuart Murdock, Bing Wu, Muan Hong Ng, Steven Johnston, Richard Boardman, Hans Fangohr, Katherine Cox, Jonathan W. Essex, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Année:

2007

Langue:

english

Fichier:

PDF, 545 KB

english, 2007

9

The properties of ion channels formed by zervamicins

P. Balaram, K. Krishna, M. Sukumar, I. R. Mellor, Mark S. P. Sansom

Journal:

European Biophysics Journal

Année:

1992

Langue:

english

Fichier:

PDF, 1.12 MB

english, 1992

10

Acquisition of siderophores in gram-negative bacteria

Faraldo-Gómez, José D., Sansom, Mark S. P.

Journal:

Nature Reviews Molecular Cell Biology

Année:

2003

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2003

11

Multiscale methods for macromolecular simulations

Paul Sherwood, Bernard R Brooks, Mark SP Sansom

Journal:

Current Opinion in Structural Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.88 MB

english, 2008

12

Molecular Dynamics Simulations of the Dimerization of Transmembrane α-Helices

Psachoulia, Emi, Marshall, David P., Sansom, Mark S. P.

Journal:

Accounts of Chemical Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2010

13

A new osteostracan fauna from the Devonian of the Welsh Borderlands and observations on the taxonomy and growth of Osteostraci

Keating, Joseph N., Sansom, Robert S., Purnell, Mark A.

Journal:

Journal of Vertebrate Paleontology

Année:

2012

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2012

14

Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design

Mark Halling-Brown, Raheel Shaban, Dan Frampton, Clare E. Sansom, Matthew Davies, Darren Flower, Melanie Duffield, Richard W. Titball, Vladimir Brusic, David S. Moss

Journal:

Molecular Immunology

Année:

2009

Langue:

english

Fichier:

PDF, 645 KB

english, 2009

15

Atlas of vertebrate decay: a visual and taphonomic guide to fossil interpretation

Sansom, Robert S., Gabbott, Sarah E., Purnell, Mark A., Orr, Patrick

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 3.77 MB

english, 2013

16

Secondary structure in oligomers of carbohydrate amino acids

Smith, Martin D., Claridge, Timothy D. W., Fleet, George W. J., Tranter, George E., Sansom, Mark S. P.

Journal:

Chemical Communications

Année:

1998

Langue:

english

Fichier:

PDF, 145 KB

english, 1998

17

Designing a Hydrophobic Barrier within Biomimetic Nanopores

Trick, Jemma. L., Wallace, E. Jayne, Bayley, Hagan, Sansom, Mark. S. P.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 4.52 MB

english, 2014

18

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

Stansfeld, Phillip J., Goose, Joseph E., Caffrey, Martin, Carpenter, Elisabeth P., Parker, Joanne L., Newstead, Simon, Sansom, Mark S.P.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 4.55 MB

english, 2015

19

Studies of the pore-forming domain of a voltage-gated potassium channel protein

Haris, Parvez I., Ramesh, Bala, Sansom, Mark S. P., Kerr, Ian D., Srai, Kaila S., Chapman, Dennis

Journal:

Protein Engineering Design and Selection

Année:

1994

Langue:

english

Fichier:

PDF, 3.09 MB

english, 1994

20

Experimental analysis of soft-tissue fossilization: opening the black box

Purnell, Mark A., Donoghue, Philip J. C., Gabbott, Sarah E., McNamara, Maria E., Murdock, Duncan J. E., Sansom, Robert S., Smith, Andrew

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 235 KB

english, 2018

21

A PIP 2 Binding Site on a Human TRP Channel: Simulation Studies of PKD2

Wang, Qinrui, Hedger, George, Aryal, Prafulla, Shi, Jiye, Carpenter, Elizabeth P., Sansom, Mark S.P.

Journal:

Biophysical Journal

Année:

2018

Langue:

english

Fichier:

PDF, 44 KB

english, 2018

22

A heuristic derived from analysis of the ion channel structural proteome permits the rapid identification of hydrophobic gates

Rao, Shanlin, Klesse, Gianni, Stansfeld, Phillip J., Tucker, Stephen J., Sansom, Mark S. P.

Journal:

Proceedings of the National Academy of Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2019

23

Water in Nanopores and Biological Channels: A Molecular Simulation Perspective

Lynch, Charlotte I., Rao, Shanlin, Sansom, Mark S. P.

Journal:

Chemical Reviews

Année:

2020

Fichier:

PDF, 9.16 MB

2020

24

Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles

Richard J. Law, Lucy R. Forrest, Kishani M. Ranatunga, Paolo La Rocca, D. Peter Tieleman, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2000

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2000

25

Transmembrane domains of viral ion channel proteins: A molecular dynamics simulation study

Wolfgang B. Fischer, Lucy R. Forrest, Graham R. Smith, Mark S. P. Sansom

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 300 KB

english, 2000

26

Viral ion channels: molecular modeling and simulation

Mark S.P. Sansom, Lucy R. Forrest, Richard Bull

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 381 KB

english, 1998

27

Dqβ polymorphism and genetic susceptibility to felty's syndrome

K. L. SO Alex, Catherine A. Warner, David Sansom, Mark J. Walport

Journal:

Arthritis & Rheumatism

Année:

1988

Langue:

english

Fichier:

PDF, 458 KB

english, 1988

28

Bioavailability of a new sustained-release theophylline capsule in fasted and non-fasted healthy subjects: Single and multiple dosing studies

Raelene J. West, Garth Boehm, Mark Dwyer, Desmond B. Williams, Lloyd N. Sansom, Antonio C. Penna

Journal:

Biopharmaceutics & Drug Disposition

Année:

1990

Langue:

english

Fichier:

PDF, 608 KB

english, 1990

29

Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies

Joanne N. Bright, Indira H. Shrivastava, Frank S. Cordes, Mark S. P. Sansom

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 257 KB

english, 2002

30

Coarse-Grain Simulations of the R-SNARE Fusion Protein in its Membrane Environment Detect Long-Lived Conformational Sub-States

Marie-Pierre Durrieu, Peter J. Bond, Mark S. P. Sansom, Richard Lavery, Marc Baaden

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 687 KB

english, 2009

31

Carbon nanotube/detergent interactions via coarse-grained molecular dynamics

Jayne Wallace, Mark Sansom

Journal:

Chemistry and Physics of Lipids

Année:

2007

Langue:

english

Fichier:

PDF, 48 KB

english, 2007

32

Membrane protein structure quality in molecular dynamics simulation

Richard J. Law, Charlotte Capener, Marc Baaden, Peter J. Bond, Jeff Campbell, George Patargias, Yalini Arinaminpathy, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics and Modelling

Année:

2005

Langue:

english

Fichier:

PDF, 195 KB

english, 2005

33

HOLE: A program for the analysis of the pore dimensions of ion channel structural models

Oliver S. Smart, Joseph G. Neduvelil, Xiaonan Wang, B.A. Wallace, Mark S.P. Sansom

Journal:

Journal of Molecular Graphics

Année:

1996

Langue:

english

Fichier:

PDF, 758 KB

english, 1996

34

Secondary structure of an isolated P-region from the voltage-gated sodium channel: a molecular modelling/dynamics study

Pascal Cosette, Ian D. Kerr, Paolo La Rocca, Hervé Duclohier, Mark S.P. Sansom

Journal:

Biophysical Chemistry

Année:

1997

Langue:

english

Fichier:

PDF, 1.01 MB

english, 1997

35

Channels formed by the transmembrane helix of phospholamban: a simulation study

Mark S.P. Sansom, Graham R. Smith, Oliver S. Smart, Steven O. Smith

Journal:

Biophysical Chemistry

Année:

1997

Langue:

english

Fichier:

PDF, 1.25 MB

english, 1997

36

Interactions of α-helices with lipid bilayers: a review of simulation studies

Phil C Biggin, Mark S.P Sansom

Journal:

Biophysical Chemistry

Année:

1999

Langue:

english

Fichier:

PDF, 417 KB

english, 1999

37

Peptides and lipid bilayers: Dynamic interactions

Journal:

Current Opinion in Colloid & Interface Science

Année:

1998

Langue:

english

Fichier:

PDF, 1.06 MB

english, 1998

38

The pro-apoptotic K-Ras 4A proto-oncoprotein does not affect tumorigenesis in theApcMin/+mouse small intestine

Charles E Patek, Mark J Arends, Lorraine Rose, Feijun Luo, Marion Walker, Paul S Devenney, Rachel L Berry, Nicola J Lawrence, Rachel A Ridgway, Owen J Sansom, Martin L Hooper

Journal:

BMC Gastroenterology

Année:

2008

Langue:

english

Fichier:

PDF, 353 KB

english, 2008

39

Proline-induced hinges in transmembrane helices: Possible roles in ion channel gating

D. Peter Tieleman, Indira H. Shrivastava, Martin R. Ulmschneider, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2001

Langue:

english

Fichier:

PDF, 264 KB

english, 2001

40

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations

José D. Faraldo-Gómez, Lucy R. Forrest, Marc Baaden, Peter J. Bond, Carmen Domene, George Patargias, Jonathan Cuthbertson, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2004

Langue:

english

Fichier:

PDF, 475 KB

english, 2004

41

Properties of integral membrane protein structures: Derivation of an implicit membrane potential

Martin B. Ulmschneider, Mark S.P. Sansom, Alfredo Di Nola

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 586 KB

english, 2005

42

Comparative molecular dynamics—Similar folds and similar motions?

Andrew Pang, Yalini Arinaminpathy, Mark S. P. Sansom, Philip C. Biggin

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2005

43

Modeling and simulations of a bacterial outer membrane protein: OprF from Pseudomonas aeruginosa

Syma Khalid, Peter J. Bond, Sundeep S. Deol, Mark S. P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 690 KB

english, 2006

44

Hydrophilic surface maps of channel-forming peptides: analysis of amphipathic helices

Ian D. Kerr, Mark S. P. Sansom

Journal:

European Biophysics Journal

Année:

1993

Langue:

english

Fichier:

PDF, 992 KB

english, 1993

45

Ion channels formed by amphipathic helical peptides

Mark S. P. Sansom, Ian D. Kerr, Ian R. Mellor

Journal:

European Biophysics Journal

Année:

1991

Langue:

english

Fichier:

PDF, 1.12 MB

english, 1991

46

The roles of serine and threonine sidechains in ion channels: a modelling study

Mark S. P. Sansom

Journal:

European Biophysics Journal

Année:

1992

Langue:

english

Fichier:

PDF, 1.49 MB

english, 1992

47

Characterization of a delayed rectifier K+channel in NG108-15 neuroblastomaXglioma cells: Gating kinetics and the effects of enrichment of membrane phospholipids with arachidonic acid

Richard McGee, Mark S. P. Sansom, Peter N. R. Usherwood

Journal:

Journal of Membrane Biology

Année:

1988

Langue:

english

Fichier:

PDF, 1.20 MB

english, 1988

48

Ion channels of biological membranes: prediction of single channel conductance

Kishani M. Ranatunga, Charlotte Adcock, Ian D. Kerr, Graham R. Smith, Mark S. P. Sansom

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Année:

1999

Langue:

english

Fichier:

PDF, 333 KB

english, 1999

49

Lipidbook: A Public Repository for Force-Field Parameters Used in Membrane Simulations

Jan Domański, Phillip J. Stansfeld, Mark S. P. Sansom, Oliver Beckstein

Journal:

Journal of Membrane Biology

Année:

2010

Langue:

english

Fichier:

PDF, 172 KB

english, 2010

50

Free energy of a potassium ion in a model of the channel formed by an amphipathic leucine-serine peptide

Graham R. Smith, Mark S. Sansom

Journal:

European Biophysics Journal

Année:

2002

Langue:

english

Fichier:

PDF, 326 KB

english, 2002